PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087661.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YB
Protein Properties Length: 168aa    MW: 17869.5 Da    PI: 6.5052
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087661.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB114.17.2e-3622893097
           NF-YB 30 daketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                    +   +v ecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk yl+k+re+egek
  XP_010087661.1 22 EQDRLVPECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKGYLQKFREIEGEK 89
                    5567899***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.6E-322293IPR009072Histone-fold
SuperFamilySSF471137.33E-252598IPR009072Histone-fold
PfamPF008082.0E-122663IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-202745No hitNo description
PROSITE patternPS0068503046IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.8E-204664No hitNo description
PRINTSPR006153.8E-206583No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MADSDNDSGG QNANSSASSP REQDRLVPEC VSEFISFITG EASDKCQREK RKTINGDDLL  60
WAMTTLGFED YVEPLKGYLQ KFREIEGEKT ALGRGQPDHA ADAVNPGGGG FGGGGGGVYG  120
GTGVAQPAAM MMMSHGHHHH HHHHNQIQGH HNMFGSGSGN SSTGRPNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-2827843693NF-YB
4awl_B1e-2827843794NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-2827843794NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087661.11e-123Nuclear transcription factor Y subunit B-3
SwissprotO233103e-46NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLW9QE071e-123W9QE07_9R
STRINGVIT_19s0015g00440.t014e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47640.16e-43nuclear factor Y, subunit B2